Understanding different dominance patterns in western Amazonian forests.

Dominance of neotropical tree communities by a few species is widely documented, but dominant trees show a variety of distributional patterns still poorly understood. Here, we used 503 forest inventory plots (93,719 individuals ≥2.5 cm diameter, 2609 species) to explore the relationships between local abundance, regional frequency and spatial aggregation of dominant species in four main habitat types in western Amazonia. Although the abundance-occupancy relationship is positive for the full dataset, we found that among dominant Amazonian tree species, there is a strong negative relationship between local abundance and regional frequency and/or spatial aggregation across habitat types. Our findings suggest an ecological trade-off whereby dominant species can be locally abundant (local dominants) or regionally widespread (widespread dominants), but rarely both (oligarchs). Given the importance of dominant species as drivers of diversity and ecosystem functioning, unravelling different dominance patterns is a research priority to direct conservation efforts in Amazonian forests.

Does environmental adaptation or dispersal history explain the geographical distribution of Ixodes ricinus and Ixodes persulcatus ticks in Finland?

In Finland, the distribution area of the taiga tick, Ixodes persulcatus (Schulze, 1930), is nested within a broader area of distribution of a congeneric species, the sheep tick, Ixodes ricinus (Linnaeus, 1758) (Acari: Ixodidae). We assess whether distinct environmental adaptations or dispersal history provides a more parsimonious explanation for the differences in the distributions of the two common and medically important ixodids in Finland. We used an innovative spatially constrained randomization procedure to analyze whether crowdsourced occurrence data points of the two tick species had statistically different associations with any of the 28 environmental variables. Using points of presence in a region of species co-occurrence, we built Maxent models to examine whether environmental factors or dispersal history could explain the absence of I. persulcatus in a part of the range of I. ricinus in Finland. Five environmental variables-number of inhabitants, road length, elevation above sea level, proportion of barren bedrock and boulders, and proportion of unsorted glacial deposits-were significant at p ≤ .05, indicating greater between-species difference in original than in the randomized data. Of these variables, only the optimum value for unsorted glacial deposits was higher for I. persulcatus than for I. ricinus. Maxent models also predicted high relative habitat suitability (suitability >80%) for I. persulcatus south of its current, sharply bounded distribution range, suggesting that the species has not fulfilled its distribution potential in Finland. The two most common and medically relevant ixodids in Finland may colonize habitats with different environmental conditions. On the contrary, the recent establishment and ongoing dispersion of I. persulcatus in Fennoscandia rather than environmental conditions cause the southernmost distribution limit of the species in Finland.

Amazon tree dominance across forest strata.

The forests of Amazonia are among the most biodiverse plant communities on Earth. Given the immediate threats posed by climate and land-use change, an improved understanding of how this extraordinary biodiversity is spatially organized is urgently required to develop effective conservation strategies. Most Amazonian tree species are extremely rare but a few are common across the region. Indeed, just 227 'hyperdominant' species account for >50% of all individuals >10 cm diameter at 1.3 m in height. Yet, the degree to which the phenomenon of hyperdominance is sensitive to tree size, the extent to which the composition of dominant species changes with size class and how evolutionary history constrains tree hyperdominance, all remain unknown. Here, we use a large floristic dataset to show that, while hyperdominance is a universal phenomenon across forest strata, different species dominate the forest understory, midstory and canopy. We further find that, although species belonging to a range of phylogenetically dispersed lineages have become hyperdominant in small size classes, hyperdominants in large size classes are restricted to a few lineages. Our results demonstrate that it is essential to consider all forest strata to understand regional patterns of dominance and composition in Amazonia. More generally, through the lens of 654 hyperdominant species, we outline a tractable pathway for understanding the functioning of half of Amazonian forests across vertical strata and geographical locations.

Bamboo, climate change and forest use: A critical combination for southwestern Amazonian forests?

About 160 000 km2 of forests in the border zone between Brazil and Peru are dominated by semi-scandent bamboos (Guadua spp.). We argue that both predicted decreased precipitation during the dry season and widespread anthropogenic disturbances will significantly increase the distribution and biomass of bamboos in the area. Seasonal dryness favours the growth of evergreen bamboos in relation to trees that shed their leaves during the dry season. Disturbance can be beneficial for the bamboo because, as a clonal plant, it is often able to recover more rapidly than trees. It also withstands dry season better than many trees. The bamboo life cycle ends in a mass mortality event every 28 years, producing potential fuel for a forest fire. Presently, natural forest fires hardly exist in the area. However, in the projected future climate with more pronounced dry season and with increased fuel load after bamboo die-off events the forests may start to catch fire that has escaped from inhabited areas or even started naturally. Fires can kill trees, thus further increasing the fuel load of the forest. As a result, the landscape may start to convert to a savanna ecosystem.

White sand vegetation in an Amazonian lowland under the perspective of a young geological history.

What controls the formation of patchy substrates of white sand vegetation in the Amazonian lowlands is still unclear. This research integrated the geological history and plant inventories of a white sand vegetation patch confined to one large fan-shaped sandy substrate of northern Amazonia, which is related to a megafan environment. We examined floristic patterns to determine whether abundant species are more often generalists than the rarer one, by comparing the megafan environments and older basement rocks. We also investigated the pattern of species accumulation as a function of increasing sampling effort. All plant groups recorded a high proportion of generalist species on the megafan sediments compared to older basement rocks. The vegetation structure is controlled by topographic gradients resulting from the smooth slope of the megafan morphology and microreliefs imposed by various megafan subenvironments. Late Pleistocene-Holocene environmental disturbances caused by megafan sedimentary processes controlled the distribution of white sand vegetation over a large area of the Amazonian lowlands, and may have also been an important factor in species diversification during this period. The integration of geological and biological data may shed new light on the existence of many patches of white sand vegetation from the plains of northern Amazonia.

Evolution within a language: environmental differences contribute to divergence of dialect groups.

BACKGROUND: The processes leading to the diversity of over 7000 present-day languages have been the subject of scholarly interest for centuries. Several factors have been suggested to contribute to the spatial segregation of speaker populations and the subsequent linguistic divergence. However, their formal testing and the quantification of their relative roles is still missing. We focussed here on the early stages of the linguistic divergence process, that is, the divergence of dialects, with a special focus on the ecological settings of the speaker populations. We adopted conceptual and statistical approaches from biological microevolution and parallelled intra-lingual variation with genetic variation within a species. We modelled the roles of geographical distance, differences in environmental and cultural conditions and in administrative history on linguistic divergence at two different levels: between municipal dialects (cf. in biology, between individuals) and between dialect groups (cf. in biology, between populations). RESULTS: We found that geographical distance and administrative history were important in separating municipal dialects. However, environmental and cultural differences contributed markedly to the divergence of dialect groups. In biology, increase in genetic differences between populations together with environmental differences may suggest genetic differentiation of populations through adaptation to the local environment. However, our interpretation of this result is not that language itself adapts to the environment. Instead, it is based on Homo sapiens being affected by its environment, and its capability to adapt culturally to various environmental conditions. The differences in cultural adaptations arising from environmental heterogeneity could have acted as nonphysical barriers and limited the contacts and communication between groups. As a result, linguistic differentiation may emerge over time in those speaker populations which are, at least partially, separated. CONCLUSIONS: Given that the dialects of isolated speaker populations may eventually evolve into different languages, our result suggests that cultural adaptation to local environment and the associated isolation of speaker populations have contributed to the emergence of the global patterns of linguistic diversity.

Using digital soil maps to infer edaphic affinities of plant species in Amazonia: Problems and prospects.

Amazonia combines semi-continental size with difficult access, so both current ranges of species and their ability to cope with environmental change have to be inferred from sparse field data. Although efficient techniques for modeling species distributions on the basis of a small number of species occurrences exist, their success depends on the availability of relevant environmental data layers. Soil data are important in this context, because soil properties have been found to determine plant occurrence patterns in Amazonian lowlands at all spatial scales. Here we evaluate the potential for this purpose of three digital soil maps that are freely available online: SOTERLAC, HWSD, and SoilGrids. We first tested how well they reflect local soil cation concentration as documented with 1,500 widely distributed soil samples. We found that measured soil cation concentration differed by up to two orders of magnitude between sites mapped into the same soil class. The best map-based predictor of local soil cation concentration was obtained with a regression model combining soil classes from HWSD with cation exchange capacity (CEC) from SoilGrids. Next, we evaluated to what degree the known edaphic affinities of thirteen plant species (as documented with field data from 1,200 of the soil sample sites) can be inferred from the soil maps. The species segregated clearly along the soil cation concentration gradient in the field, but only partially along the model-estimated cation concentration gradient, and hardly at all along the mapped CEC gradient. The main problems reducing the predictive ability of the soil maps were insufficient spatial resolution and/or georeferencing errors combined with thematic inaccuracy and absence of the most relevant edaphic variables. Addressing these problems would provide better models of the edaphic environment for ecological studies in Amazonia.

Urban Power Line Corridors as Novel Habitats for Grassland and Alien Plant Species in South-Western Finland.

Regularly managed electric power line corridors may provide habitats for both early-successional grassland plant species and disturbance-dependent alien plant species. These habitats are especially important in urban areas, where they can help conserve native grassland species and communities in urban greenspace. However, they can also provide further footholds for potentially invasive alien species that already characterize urban areas. In order to implement power line corridors into urban conservation, it is important to understand which environmental conditions in the corridors favor grassland species and which alien species. Likewise it is important to know whether similar environmental factors in the corridors control the species composition of the two groups. We conducted a vegetation study in a 43 kilometer long urban power line corridor network in south-western Finland, and used generalized linear models and distance-based redundancy analysis to determine which environmental factors best predict the occurrence and composition of grassland and alien plant species in the corridors. The results imply that old corridors on dry soils and steep slopes characterized by a history as open areas and pastures are especially suitable for grassland species. Corridors suitable for alien species, in turn, are characterized by productive soils and abundant light and are surrounded by a dense urban fabric. Factors controlling species composition in the two groups are somewhat correlated, with the most important factors including light abundance, soil moisture, soil calcium concentration and soil productivity. The results have implications for grassland conservation and invasive alien species control in urban areas.

Similar understorey structure in spite of edaphic and floristic dissimilarity in Amazonian forests / Similaridade na estrutura do subosque a despeito de dissimilaridades edáficas e florísticas em florestas da Amazônia

Forest structure determines light availability for understorey plants. The structure of lowland Amazonian forests is known to vary over long edaphic gradients, but whether more subtle edaphic variation also affects forest structure has not beenresolved. In western Amazonia, the majority of non-flooded forests grow on soils derived either from relatively fertile sediments of the Pebas Formation or from poorer sediments of the Nauta Formation. The objective of this study was to compare structure and light availability in the understorey of forests growing on these two geological formations. We measured canopy openness and tree stem densities in three size classes in northeastern Peru in a total of 275 study points in old-growth terra firme forests representing the two geological formations. We also documented variation in floristic composition (ferns, lycophytes and the palm Iriartea deltoidea) and used Landsat TM satellite image information to model the forest structural and floristic features over a larger area. The floristic compositions of forests on the two formations were clearly different, and this could also be modelled with the satellite imagery. In contrast, the field observations of forest structure gave only a weak indication that forests on the Nauta Formation might be denser than those on the Pebas Formation. The modelling of forest structural features with satellite imagery did not support this result. Our results indicate that the structure of forest understorey varies much less than floristic composition does over the studied edaphic difference.

A estrutura florestal determina a disponibilidade de luz para plantas do subosque. Nas planícies Amazônicas, a estrutura florestal varia com fortes gradientes edáficos. O possível efeito de variações edáficas mais sutis sob a estrutura das florestas não está resolvido. Na Amazônia ocidental, a maioria das florestas não-inundadas crescem em solos derivados de sedimentos relativamente férteis da Formação Pebas ou de sedimentos mais pobres da Formação Nauta. Nosso objetivo é comparar a disponilidade de luz e a estrutura do subosque de florestas crescendo sobre duas formações geológicas. Nós medimos a abertura do dossel e a densidade de troncos de árvores em três classes de diâmetro no nordeste Peruano, totalizando 275 pontos de estudo em florestas de terra-firme representando as duas formações geológicas. Além disso, documentamos as variações na composição florística (samambaias, licófitas e a palmeira Iriartea deltoidea) e utilizamos informações de imagens de satélite Landsat TM para modelar as características estruturais e florísticas das florestas em uma área mais ampla. A composição florística sobre as duas formações foram claramente distintas e isso também pôde ser modelado com as imagens de satélite. Já as observações de campo sobre a estrutura da floresta deram uma fraca indicação de que as florestas sobre a Formação Nauta poderiam ser mais densas do que as florestas sobre a Formação Pebas. A modelagem das caraterísticas da estrutura florestal com imagens de satélite não deram o mesmo resultado. Nossos resultados indicam que a estrutura do subosque varia muito menos do que composição florística no gradiente edáfico estudado.

Hyperdominance in Amazonian forest carbon cycling.

While Amazonian forests are extraordinarily diverse, the abundance of trees is skewed strongly towards relatively few 'hyperdominant' species. In addition to their diversity, Amazonian trees are a key component of the global carbon cycle, assimilating and storing more carbon than any other ecosystem on Earth. Here we ask, using a unique data set of 530 forest plots, if the functions of storing and producing woody carbon are concentrated in a small number of tree species, whether the most abundant species also dominate carbon cycling, and whether dominant species are characterized by specific functional traits. We find that dominance of forest function is even more concentrated in a few species than is dominance of tree abundance, with only ≈1% of Amazon tree species responsible for 50% of carbon storage and productivity. Although those species that contribute most to biomass and productivity are often abundant, species maximum size is also influential, while the identity and ranking of dominant species varies by function and by region.

Interspecific variation in functional traits in relation to species climatic niche optima in Andean Polylepis (Rosaceae) tree species: evidence for climatic adaptations.

Plant functional traits can be genetically determined or phenotypically plastic. We assessed the degree of genetic determinism in the functional traits of Andean Polylepis tree species among 14 important traits that enable the species to withstand cold and dry conditions. We conducted a common garden experiment and related the species-specific means of the functional traits to the variables of climatic niche optima of the species (mean annual temperature and annual precipitation), deducing that if the interspecific variation in the functional trait is related to the species climatic niche optima according to the theoretically-expected pattern of climate-trait relationship, the variation of the trait must be genetically determined. In general, the traits were related either to species temperature or precipitation optima. For example, leaf size, maximum photosynthesis rate and root tip abundance were related to temperature, whereas light compensation and light saturation points were related to precipitation. Only leaf size showed a significant phylogenetic signal, indicating that most of the manifested climate-trait relationships are not caused purely by phylogeny, but are mainly a result of species specialisation along an environmental gradient. However, in many cases the relationships were rather weak. This suggests that important functional traits of Polylepis species involve both genetic and phenotypic components aiming to maximise the overall fitness of the species at high elevations.

Comment on "Disentangling the drivers of ß diversity along latitudinal and elevational gradients".

Kraft et al. (Report, 23 September 2011, p. 1755) argued that the latitudinal trend in ß diversity is spurious and just reflects a trend in γ diversity. Their results depend on the idiosyncrasies of their data, especially the latitudinally varying degree of undersampling and a local sampling setup that is not suitable for analyzing drivers of ß diversity.

Geological control of floristic composition in Amazonian forests.

AIM: Conservation and land-use planning require accurate maps of patterns in species composition and an understanding of the factors that control them. Substantial doubt exists, however, about the existence and determinants of large-area floristic divisions in Amazonia. Here we ask whether Amazonian forests are partitioned into broad-scale floristic units on the basis of geological formations and their edaphic properties. LOCATION: Western and central Amazonia. METHODS: We used Landsat imagery and Shuttle Radar Topography Mission (SRTM) digital elevation data to identify a possible floristic and geological discontinuity of over 300 km in northern Peru. We then used plant inventories and soil sampling to document changes in species composition and soil properties across this boundary. Data were obtained from 138 sites distributed along more than 450 km of road and river. On the basis of our findings, we used broad-scale Landsat and SRTM mosaics to identify similar patterns across western and central Amazonia. RESULTS: The discontinuity identified in Landsat and SRTM data corresponded to a 15-fold change in soil cation concentrations and an almost total change in plant species composition. This discontinuity appears to be caused by the widespread removal of cation-poor surface sediments by river incision to expose cation-rich sediments beneath. Examination of broad-scale Landsat and SRTM mosaics indicated that equivalent processes have generated a north-south discontinuity of over 1500 km in western Brazil. Due to similarities with our study area, we suggest that this discontinuity represents a chemical and ecological limit between western and central Amazonia. MAIN CONCLUSIONS: Our findings suggest that Amazonian forests are partitioned into large-area units on the basis of geological formations and their edaphic properties. The evolution of these units through geological time may provide a general mechanism for biotic diversification in Amazonia. These compositional units, moreover, may correspond to broad-scale functional units. The existence of large-area compositional and functional units would suggest that protected-area, carbon sequestration, and other land-use strategies in Amazonia be implemented on a region-by-region basis. The methods described here can be used to map these patterns, and thus enable effective conservation and management of Amazonian forests.

Analyzing or explaining beta diversity? Understanding the targets of different methods of analysis.

It has been actively discussed recently what statistical methods are appropriate when one is interested in testing hypotheses about the origin of beta diversity, especially whether one should use the raw-data approach (e.g., canonical analysis such as RDA and CCA) or the distance approach (e.g., Mantel test and multiple regression on distance matrices). Most of the confusion seems to stem from uncertainty as to what is the response variable in the different approaches. Here our aim is to clarify this issue. We also show that, although both the raw-data approach and the distance approach can often be used to address the same ecological hypothesis, they target fundamentally different predictions of those hypotheses. As the two approaches shed light on different aspects of the ecological hypotheses, they should be viewed as complementary rather than alternative ways of analyzing data. However, in some cases only one of the approaches may be appropriate. We argue that S. P. Hubbell's neutral theory can only be tested using the distance approach, because its testable predictions are stated in terms of distances, not in terms of raw data. In all cases, the decision on which method is chosen must be based on which addresses the question at hand, it cannot be based on which provides the highest proportion of explained variance in simulation studies.

Dispersal, environment, and floristic variation of western Amazonian forests.

The distribution of plant species, the species compositions of different sites, and the factors that affect them in tropical rain forests are not well understood. The main hypotheses are that species composition is either (i) uniform over large areas, (ii) random but spatially autocorrelated because of dispersal limitation, or (iii) patchy and environmentally determined. Here we test these hypotheses, using a large data set from western Amazonia. The uniformity hypothesis gains no support, but the other hypotheses do. Environmental determinism explains a larger proportion of the variation in floristic differences between sites than does dispersal limitation; together, these processes explain 70 to 75% of the variation. Consequently, it is important that management planning for conservation and resource use take into account both habitat heterogeneity and biogeographic differences.

Comparacion floristica de doce parcelas en bosque de tierra firme en la amazonia peruana

Floristic composition of twelve plots, 25 m by 25 m, was studied in the Peruvian Amazonia in order to investigate if it were possible to use a part of the flora as an indicator of the changes observed in other components of the flora. Floristic similarities among the plots were calculated using six different taxonomic or physiognomic groups: ferns, the families Melastomataceae and Myristicaceae, trees thicker than 2.5 cm diameter at breast hight (DBH), trees between 2.5 cm and 5 cm DBH, and trees thicker than 5 cm DBH. The similarities were used for agglomerati ve classifications of the plots and for analyzing the correlations among the different groups of plants with Mantel's test. The results indicate that floristic changes were similar in all of the groups and therefore every group can potentially be used as an indicator.

Um estudo da composição florística de doze parcelas de 25 m 25 m foi realizado na Amazônia peruana com o objetivo de observar a possibilidade de utilizar uma parte da flora como indicador para as alterações anotadas em outros elementos da flora. As similaridades florísticas entre as parcelas foram definidas usando seis grupos taxonômicos ou fisionômicos diferentes: fetos, as famílias Melastomataceae e Myristicaceae, árvores com diâmetro á altura do peito (DAP) maior a 2.5 cm, árvores com DAP entre 2.5 cm e 5 cm, e árvores maiores a 5 cm de DAP. As similaridades foram utilizadas para classificar as parcelas e para analisar as correlações entre os grupos diferentes de plantas com a prova de Mantel. Os resultados mostram que as alterações florísticas são similares em todos os grupos, e por isso qualquer destes grupos é capaz de servir de indicador.

Lago amazonas: fact or fancy?

It has been suggested that a huge lake, Lago Amazonas, covered a large part of the Amazon basin until as recently as two thousand years ago. According to this hypothesis, the topmost sediments in western Amazonia are almost universally young deposite of lacustrine and deltaic origin. The hypothesis has gained some attention among biologists because of its implications for biological phenomena in Amazonia, especially biogeography and biodiversity. According to the available geological data, however, Amazonia is geologically far more complex than assumed by the lake hypothesis. In the following discussion we will point out the weaknesses of the Lago Amazonas hypothesis, and indicate alternative explanations of the surface geology that are based on tectonically controlled fluvial deposition.

Foi proposta a idéia que uma parte importante da bacia do Amazonas foi coberta por um vasto lago, Lago Amazonas, até há época tão recente como dois mil anos atrás. Segundo esta hipótese os sedimentos de topo na região ocidental da Amazônia são quase universalmente depósitos recentes de origem lacustre e estuário. A hipótese tem chamado atenção dos biólogos pelas suas implicações com fenômenos biológicos na Amazônia, particularmente com a biogeografìa e a biodiversidade.A Amazônia, apresenta, contudo, uma unidade geologicamente muito mais complexa do que pressupõe esta hipótese de lago, hipótese que nem tem apoio dos dados disponíveis sobre o tectonismo, a geomorfologia, a estratigrafia e os solos. Vastas áreas nas regiões do Peru e da Bolivia da bacia do Amazonas se caracterizam atualmente pela deposição fluvial, dominada pelos processos tectônicais. São processos que foram ativos durante dezenas de milhões de anos explicando assim a acumulação dos sedimentos Quaternários não-consolidados, característicos da região ocidental da Amazônia. Há uma variação extensa dos sedimentos de topo tanto pela sua composição como pela sua idade devido às influências locais de fatores diferentes. A hipótese que pressupõe o ambiente de depósitos ter no recente passado diferido basicamente do ambiente atual, precisava, para ser aceita, provas mais convincentes do que foi presentado pelos proponentes da hipótese de Lago Amazonas.Devido à instalidade e heterogeneidade do meio ambiente da Amazônia, é preciso prudência quando se generaliza baseando-se nas observações duma área limitada. Sistemas de depósitos diferentes são capazes de produzir sedimentos estratigrafica mente semelhantes, independentemente um do outro. Sem ter provas evidentes tanto da continuidade como da deposição simultanea, estabelecer uma correlação entre formações de locais remotos parece muito arriscado.